Home -> Genomics -> Next Generation Sequencing Services -> Small RNA NGS Sequencing Service, Single Adapter Ligation and Circularization-based

Small RNA NGS Sequencing Service, Single Adapter Ligation and Circularization-based

RealSeq® Technology for small RNA sequencing library preparation
Library preparation and sequencing services for RNAs, miRNAs and other small RNAs from total RNA (tissue or cell culture) or from biofluid samples.

• Novel method for bias-free small-RNA sequencing libraries
• Superior quality sequencing libraries
• Avoids underdetection of many miRNAs
• For total RNA samples and biological samples (tissue and cells or biofluids)
• Service includes:
>> Preparation of small RNA sequencing libraries
>> Library QC
>> Next-Generation-Sequencing on an Illumina platform (MiniSeq or Next Seq)
>> Optional RNA Preparation without additional cost


Accuracy through circularization
RealSeq® is a novel method for preparing small-RNA sequencing libraries that nearly eliminates incorporation bias in Next-Generation-Sequencing (NSG). This technology solves the problem of commonly used sequencing library preparations that lead to underdetection of many miRNAs, some by as much as 10,000-fold.

Under-representation in sequencing libraries can obscure the presence of some RNAs, including potential biomarkers. Accurate quantification of microRNAs (miRNA) and other small RNAs is important for understanding their biology and for developing new biomarkers and therapeutic targets.

Most bias stems from sequence-dependent variability in the enzymatic ligation reactions that attach the two adapters to the 3’ and 5’ ends of the miRNAs /small RNAs during preparation of sequencing libraries. By using a novel single adapter and circularization, RealSeq® greatly reduces library preparation bias.


Read more about SomaGenics´ RealSeq® Technology:
Genome Biology 19:105 (2018)
Decreasing miRNA sequencing bias using a single adapter and circularization approach. Sergio Barberán-Soler, Jenny M. Vo, Ryan E. Hogans, Anne Dallas, Brian H. Johnston and Sergei A. Kazakov.


RealSeq® Technology Overview


Technology Schematic

Image
3´ ends of miRNAs or any other 5’-p and 3’-OH small RNAs are ligated to RealSeq® adapters which contain standard adapter sequences (shown in blue and green) that are compatible with Illumina/Solexa sequencing.

Unligated adapters are blocked before circularization of the miRNA-adapter product and then removed. This intramolecular ligation is significantly more efficient than intermolecular ligation of 5’-adapters in standard two-adapter ligation schemes.

Reverse transcription of the circularized miRNA-adapter products yields monomer cDNAs with the targets sequences flanked by Illumina 5’- and 3’-adapter sequences. PCR amplification of the RT product with the extended, bar-coded PCR primers, yields amplicons ready for size selection using SPRI select technology (Beckman Coulter) which is included in RealSeq®-AC and RealSeq®-biofluids kits.


RealSeq® accurately quantifies small RNAs

Image
One pmole of miRXPlore Universal Reference pool (Miltenyi Biotec) was used to compare incorporation bias in six different library preparation kits. Purified libraries were sequenced on the Illumina MiSeq platform. Trimmed sequencing reads were aligned to a custom miRNA reference. Reads mapping to miRNAs were counted and fold-deviations from the equimolar input were calculated and plotted as log2 values. Measurements of miRNA levels within a factor of two of the expected values (between vertical lines) are considered unbiased (Fuchs et al, 2015). The method of adapter attachment to the miRNAs is noted in the legend. Libraries prepared using RealSeq®-AC have substantially fewer miRNAs with bias than the ones prepared using any of five other commercially available library preparation kits.


Libraries prepared with RealSeq®-biofluids yield substantially more miRNAs compared to competitor kits
Image
Sequencing results obtained from commercially available library preparation kits were compared using 200-ul aliquots from the same plasma samples. Short reads are classified as reads <15 nt length after adapter trimming. Reads passing this filter are then aligned to a reference file with all human miRNAs (miRBase 21, orange), and the remaining reads are aligned to the human genome (hg19, red).

RealSeq® - biofluids yields significantly fewer short or unmappable reads (grey) than the other two commercial libraries available that are indicated for biofluids analysis.

The number of sequenced miRNAs and of other mappable small RNAs is substantially higher.


RealSeq®-biofluids allows sequencing of significantly more miRNAs
Image
Comparison of miRNAs read frequencies of three different library preparation kits (gel-free protocols) from 200 ul plasma samples. Reads were subsampled to 10 million reads per kit and aligned to a reference that includes all human miRNAs listed in miRBase 21 (Miltenyi Biotec). The number of miRNAs detected at different coverage for each library preparation kit is shown.

Especially low copy-number miRNAs are significantly more sequenced when the RealSeq® - biofluids kit was used for library preparation.

Related Links

RealSeq Kits f. Small RNA Sequencing NGS Library Preparation

 

 

Description Cat# Size Price    
Small RNA LibraryPrep-Sequencing-Service (from Cell/Tissue Sample or total RNA) with RealSeq-AC 500-totalRNA-SOM 10 Mio reads/sample 365 € DETAILS   Add to Cart 
Small RNA LibraryPrep-Sequencing-Service (from Biofluid Sample or total RNA from Biofluids) with RealSeq-biofluids 600-totalRNA-SOM 10 Mio reads/sample 365 € DETAILS   Add to Cart 

BioCat Autumn Special

Autumn Special

15% OFF RayBio ELISA Kits and Antibody Arrays

Electrophoresis

40% OFF BioCat Universal Agarose

DNA and RNA Purification

Bioline

Use ISOLATE II Nucleic Acid Isolation Kits for the purification of high-quality DNA and RNA.

Email Newsletter

Subscribe to the BioCat Email Newsletter.

Clone Resources

BioCat Clone Resources

Browse two of the most renowned clone resources of full-length cDNA, ORF, and shRNA clones as well as siRNA and yeast knockout strains.

Genome Engineering

Genome Engineering

Use the CRISPR/Cas9 SmartNuclease System to edit the genome.

ExoQuick and ExoQuick-TC

ExoQuick Exosome Isolation

Benefit from the most cited exosome isolation reagent for efficient exosome isolation and exosomal RNA purification from biofluids or culture media.

Home
Imprint / Impressum | Privacy Policy / Datenschutzerklärung
Top of Page Up!